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Biodiversity Genomes · 2025

Chromosome-scale genome sequences of two Charadriiformes species: Scolopax rusticola and Lymnocryptes minimus

Delpuech E, Leitwein M, Couloux A, Labadie K, Cruaud C, Aury JM, Bodin C, Lapébie P

The authors present high-quality genome assemblies of two waders, the Eurasian woodcock and the jack snipe. Illumina and Nanopore sequencing of fresh blood samples, followed by Hi-C data, reconstruct the chromosomes; the data are public in GenBank.

The question
Can complete reference genomes be produced for the Eurasian woodcock and the jack snipe?
The approach
Illumina and Nanopore sequencing of fresh blood from wild birds, de novo assembly, then integration of Hi-C data to reconstruct chromosome structure.
What the article brings
Two high-quality, chromosome-scale assemblies; raw reads and assemblies are available in GenBank.
The limits
A resource article: it provides reference genomes for future studies, without population analyses at this stage.

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The figures of this article are not reproduced here; they can be viewed in the published article.

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